NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,276.2 |
| Mean read quality |
11.3 |
| Median read length |
4,123.0 |
| Median read quality |
12.6 |
| Number of reads |
55,952.0 |
| Read length N50 |
4,522.0 |
| STDEV read length |
1,503.8 |
| Total bases |
239,260,845.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
55952 (100.0%) 239.3Mb |
| >Q7 |
55853 (99.8%) 238.9Mb |
| >Q10 |
48596 (86.9%) 209.7Mb |
| >Q12 |
34718 (62.0%) 151.9Mb |
| >Q15 |
750 (1.3%) 3.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (3904) |
| 2 |
16.6 (4678) |
| 3 |
16.6 (2300) |
| 4 |
16.5 (188) |
| 5 |
16.5 (5363) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11896 (10.5) |
| 2 |
11680 (8.9) |
| 3 |
11540 (13.8) |
| 4 |
11415 (11.6) |
| 5 |
11271 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot