NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,364.7 |
| Mean read quality |
11.4 |
| Median read length |
3,240.0 |
| Median read quality |
12.5 |
| Number of reads |
2,593.0 |
| Read length N50 |
3,432.0 |
| STDEV read length |
1,148.3 |
| Total bases |
8,724,655.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2593 (100.0%) 8.7Mb |
| >Q7 |
2591 (99.9%) 8.7Mb |
| >Q10 |
2261 (87.2%) 7.7Mb |
| >Q12 |
1562 (60.2%) 5.4Mb |
| >Q15 |
63 (2.4%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3079) |
| 2 |
16.6 (3094) |
| 3 |
16.5 (2925) |
| 4 |
16.5 (3091) |
| 5 |
16.4 (3097) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7034 (13.8) |
| 2 |
7011 (11.5) |
| 3 |
6989 (8.5) |
| 4 |
6986 (12.1) |
| 5 |
6985 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot