NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,907.9 |
| Mean read quality |
10.4 |
| Median read length |
3,019.5 |
| Median read quality |
11.6 |
| Number of reads |
2,496.0 |
| Read length N50 |
3,404.0 |
| STDEV read length |
1,255.3 |
| Total bases |
7,258,226.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2496 (100.0%) 7.3Mb |
| >Q7 |
2475 (99.2%) 7.3Mb |
| >Q10 |
1890 (75.7%) 6.0Mb |
| >Q12 |
1022 (40.9%) 3.3Mb |
| >Q15 |
10 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2022) |
| 2 |
16.3 (1691) |
| 3 |
16.2 (2038) |
| 4 |
15.5 (3418) |
| 5 |
15.3 (2283) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7494 (9.1) |
| 2 |
6415 (7.1) |
| 3 |
5932 (13.0) |
| 4 |
5906 (10.3) |
| 5 |
5905 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot