NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,152.5 |
| Mean read quality |
10.7 |
| Median read length |
3,096.0 |
| Median read quality |
12.2 |
| Number of reads |
3,325.0 |
| Read length N50 |
3,626.0 |
| STDEV read length |
1,559.8 |
| Total bases |
10,482,208.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3325 (100.0%) 10.5Mb |
| >Q7 |
3270 (98.3%) 10.4Mb |
| >Q10 |
2638 (79.3%) 9.0Mb |
| >Q12 |
1790 (53.8%) 6.3Mb |
| >Q15 |
77 (2.3%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (4001) |
| 2 |
17.7 (3973) |
| 3 |
17.5 (3995) |
| 4 |
17.3 (3980) |
| 5 |
17.1 (3992) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20307 (7.1) |
| 2 |
10572 (13.6) |
| 3 |
10363 (14.3) |
| 4 |
10240 (10.8) |
| 5 |
10155 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot