NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,098.0 |
| Mean read quality |
11.7 |
| Median read length |
4,064.0 |
| Median read quality |
13.0 |
| Number of reads |
35,068.0 |
| Read length N50 |
4,401.0 |
| STDEV read length |
1,271.8 |
| Total bases |
143,708,893.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35068 (100.0%) 143.7Mb |
| >Q7 |
34977 (99.7%) 143.5Mb |
| >Q10 |
31354 (89.4%) 129.9Mb |
| >Q12 |
24265 (69.2%) 101.5Mb |
| >Q15 |
2256 (6.4%) 9.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (6539) |
| 2 |
17.5 (6377) |
| 3 |
17.4 (6124) |
| 4 |
17.4 (5196) |
| 5 |
17.4 (6551) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11596 (11.9) |
| 2 |
10801 (8.0) |
| 3 |
9559 (14.0) |
| 4 |
9405 (13.1) |
| 5 |
9293 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot