NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,033.3 |
| Mean read quality |
12.0 |
| Median read length |
3,975.0 |
| Median read quality |
13.3 |
| Number of reads |
779,187.0 |
| Read length N50 |
4,410.0 |
| STDEV read length |
1,344.5 |
| Total bases |
3,142,695,045.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
779187 (100.0%) 3142.7Mb |
| >Q7 |
777282 (99.8%) 3137.0Mb |
| >Q10 |
711041 (91.3%) 2902.7Mb |
| >Q12 |
579926 (74.4%) 2398.5Mb |
| >Q15 |
60956 (7.8%) 262.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.2 (297) |
| 2 |
17.6 (3990) |
| 3 |
17.6 (3756) |
| 4 |
17.6 (6081) |
| 5 |
17.5 (2598) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12426 (10.8) |
| 2 |
12046 (9.5) |
| 3 |
11731 (14.4) |
| 4 |
11540 (9.4) |
| 5 |
11213 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot