NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,938.0 |
| Mean read quality |
10.7 |
| Median read length |
4,003.0 |
| Median read quality |
12.4 |
| Number of reads |
2,747.0 |
| Read length N50 |
4,949.0 |
| STDEV read length |
1,962.3 |
| Total bases |
10,817,603.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2747 (100.0%) 10.8Mb |
| >Q7 |
2697 (98.2%) 10.8Mb |
| >Q10 |
2136 (77.8%) 9.3Mb |
| >Q12 |
1550 (56.4%) 6.9Mb |
| >Q15 |
62 (2.3%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (5599) |
| 2 |
17.2 (5580) |
| 3 |
16.0 (2358) |
| 4 |
15.8 (2772) |
| 5 |
15.8 (1645) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9333 (8.0) |
| 2 |
9188 (9.6) |
| 3 |
8975 (10.0) |
| 4 |
8965 (13.8) |
| 5 |
8906 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot