NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,882.4 |
| Mean read quality |
10.7 |
| Median read length |
4,036.5 |
| Median read quality |
12.6 |
| Number of reads |
1,656.0 |
| Read length N50 |
4,958.0 |
| STDEV read length |
2,198.5 |
| Total bases |
6,429,190.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1656 (100.0%) 6.4Mb |
| >Q7 |
1626 (98.2%) 6.4Mb |
| >Q10 |
1263 (76.3%) 5.6Mb |
| >Q12 |
994 (60.0%) 4.6Mb |
| >Q15 |
55 (3.3%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (4536) |
| 2 |
18.2 (3080) |
| 3 |
18.2 (3823) |
| 4 |
18.0 (3866) |
| 5 |
17.0 (2756) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10786 (13.5) |
| 2 |
10510 (7.5) |
| 3 |
10180 (8.4) |
| 4 |
9867 (15.2) |
| 5 |
9826 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot