NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,700.1 |
| Mean read quality |
11.0 |
| Median read length |
4,517.5 |
| Median read quality |
12.0 |
| Number of reads |
3,852.0 |
| Read length N50 |
5,361.0 |
| STDEV read length |
1,769.1 |
| Total bases |
18,104,725.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3852 (100.0%) 18.1Mb |
| >Q7 |
3848 (99.9%) 18.1Mb |
| >Q10 |
3258 (84.6%) 15.6Mb |
| >Q12 |
1942 (50.4%) 9.4Mb |
| >Q15 |
25 (0.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (6093) |
| 2 |
16.0 (3798) |
| 3 |
15.9 (3419) |
| 4 |
15.8 (4512) |
| 5 |
15.5 (2437) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9726 (9.0) |
| 2 |
9508 (10.2) |
| 3 |
9505 (9.2) |
| 4 |
9491 (12.9) |
| 5 |
9481 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot