NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
889.8 |
| Mean read quality |
8.1 |
| Median read length |
217.0 |
| Median read quality |
8.3 |
| Number of reads |
2,712.0 |
| Read length N50 |
3,315.0 |
| STDEV read length |
1,407.6 |
| Total bases |
2,413,065.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2712 (100.0%) 2.4Mb |
| >Q7 |
2712 (100.0%) 2.4Mb |
| >Q10 |
487 (18.0%) 1.3Mb |
| >Q12 |
171 (6.3%) 0.6Mb |
| >Q15 |
8 (0.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2291) |
| 2 |
16.1 (2159) |
| 3 |
16.0 (3429) |
| 4 |
15.4 (2198) |
| 5 |
15.3 (3656) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8101 (8.3) |
| 2 |
7462 (8.3) |
| 3 |
6981 (8.3) |
| 4 |
6740 (9.6) |
| 5 |
6458 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot