NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,755.6 |
| Mean read quality |
11.5 |
| Median read length |
4,828.0 |
| Median read quality |
12.7 |
| Number of reads |
3,043.0 |
| Read length N50 |
5,402.0 |
| STDEV read length |
1,788.5 |
| Total bases |
14,471,256.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3043 (100.0%) 14.5Mb |
| >Q7 |
3036 (99.8%) 14.5Mb |
| >Q10 |
2743 (90.1%) 13.3Mb |
| >Q12 |
1975 (64.9%) 9.7Mb |
| >Q15 |
18 (0.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (5444) |
| 2 |
15.9 (6380) |
| 3 |
15.5 (3880) |
| 4 |
15.4 (5343) |
| 5 |
15.3 (5564) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10532 (15.0) |
| 2 |
10505 (12.1) |
| 3 |
10494 (13.5) |
| 4 |
10485 (12.6) |
| 5 |
10464 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot