NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,877.8 |
| Mean read quality |
10.1 |
| Median read length |
3,077.5 |
| Median read quality |
11.5 |
| Number of reads |
352.0 |
| Read length N50 |
3,837.0 |
| STDEV read length |
1,823.1 |
| Total bases |
1,013,002.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
352 (100.0%) 1.0Mb |
| >Q7 |
352 (100.0%) 1.0Mb |
| >Q10 |
245 (69.6%) 0.9Mb |
| >Q12 |
138 (39.2%) 0.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.4 (3381) |
| 2 |
14.4 (3677) |
| 3 |
14.3 (2941) |
| 4 |
14.2 (3531) |
| 5 |
14.1 (2186) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8474 (11.1) |
| 2 |
8298 (13.4) |
| 3 |
7264 (9.8) |
| 4 |
7191 (11.7) |
| 5 |
6730 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot