NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,354.0 |
| Mean read quality |
7.7 |
| Median read length |
2,516.5 |
| Median read quality |
10.2 |
| Number of reads |
1,468.0 |
| Read length N50 |
3,209.0 |
| STDEV read length |
1,410.8 |
| Total bases |
3,455,718.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1285 (87.5%) 3.2Mb |
| >Q7 |
993 (67.6%) 2.8Mb |
| >Q10 |
756 (51.5%) 2.4Mb |
| >Q12 |
424 (28.9%) 1.4Mb |
| >Q15 |
1 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (4261) |
| 2 |
14.9 (3395) |
| 3 |
14.8 (3994) |
| 4 |
14.7 (4273) |
| 5 |
14.5 (3755) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8138 (7.9) |
| 2 |
7941 (10.2) |
| 3 |
6692 (12.7) |
| 4 |
6487 (11.4) |
| 5 |
6029 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot