NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,600.2 |
| Mean read quality |
11.1 |
| Median read length |
3,747.0 |
| Median read quality |
12.6 |
| Number of reads |
42.0 |
| Read length N50 |
4,162.0 |
| STDEV read length |
1,584.2 |
| Total bases |
151,210.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
42 (100.0%) 0.2Mb |
| >Q7 |
42 (100.0%) 0.2Mb |
| >Q10 |
37 (88.1%) 0.1Mb |
| >Q12 |
25 (59.5%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.3 (3456) |
| 2 |
14.1 (4039) |
| 3 |
14.1 (4271) |
| 4 |
13.9 (4162) |
| 5 |
13.9 (2558) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6863 (9.8) |
| 2 |
6354 (13.5) |
| 3 |
6068 (13.4) |
| 4 |
5715 (13.0) |
| 5 |
5199 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot