NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,195.8 |
| Mean read quality |
10.6 |
| Median read length |
3,199.0 |
| Median read quality |
11.7 |
| Number of reads |
62,541.0 |
| Read length N50 |
3,607.0 |
| STDEV read length |
1,281.2 |
| Total bases |
199,867,673.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
62541 (100.0%) 199.9Mb |
| >Q7 |
62171 (99.4%) 199.3Mb |
| >Q10 |
47162 (75.4%) 157.9Mb |
| >Q12 |
28060 (44.9%) 96.4Mb |
| >Q15 |
2243 (3.6%) 8.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (3062) |
| 2 |
17.5 (229) |
| 3 |
17.5 (2495) |
| 4 |
17.4 (3771) |
| 5 |
17.1 (2642) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14550 (8.9) |
| 2 |
13343 (9.2) |
| 3 |
13123 (7.2) |
| 4 |
12668 (9.0) |
| 5 |
10424 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot