NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,822.5 |
| Mean read quality |
11.5 |
| Median read length |
3,503.0 |
| Median read quality |
12.8 |
| Number of reads |
3,063.0 |
| Read length N50 |
4,600.0 |
| STDEV read length |
1,609.6 |
| Total bases |
11,708,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3063 (100.0%) 11.7Mb |
| >Q7 |
3059 (99.9%) 11.7Mb |
| >Q10 |
2702 (88.2%) 10.5Mb |
| >Q12 |
2026 (66.1%) 8.1Mb |
| >Q15 |
102 (3.3%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (3696) |
| 2 |
16.8 (2541) |
| 3 |
16.2 (3277) |
| 4 |
16.1 (4625) |
| 5 |
16.0 (2841) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8894 (14.1) |
| 2 |
8893 (12.2) |
| 3 |
8893 (11.7) |
| 4 |
8888 (13.9) |
| 5 |
8851 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot