NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,135.3 |
| Mean read quality |
12.3 |
| Median read length |
3,052.0 |
| Median read quality |
13.6 |
| Number of reads |
287,847.0 |
| Read length N50 |
3,367.0 |
| STDEV read length |
1,016.0 |
| Total bases |
902,474,953.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
287847 (100.0%) 902.5Mb |
| >Q7 |
287829 (100.0%) 902.5Mb |
| >Q10 |
269222 (93.5%) 847.2Mb |
| >Q12 |
222498 (77.3%) 706.2Mb |
| >Q15 |
45819 (15.9%) 150.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (3136) |
| 2 |
19.1 (321) |
| 3 |
18.4 (934) |
| 4 |
18.3 (2763) |
| 5 |
18.1 (4060) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9226 (11.2) |
| 2 |
9169 (9.1) |
| 3 |
9038 (15.1) |
| 4 |
9030 (13.4) |
| 5 |
8746 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot