NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,517.0 |
| Mean read quality |
11.4 |
| Median read length |
3,441.0 |
| Median read quality |
12.7 |
| Number of reads |
456,914.0 |
| Read length N50 |
3,793.0 |
| STDEV read length |
1,148.9 |
| Total bases |
1,606,945,485.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
456914 (100.0%) 1606.9Mb |
| >Q7 |
456042 (99.8%) 1604.2Mb |
| >Q10 |
405122 (88.7%) 1435.4Mb |
| >Q12 |
292613 (64.0%) 1049.5Mb |
| >Q15 |
8396 (1.8%) 30.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (329) |
| 2 |
18.3 (354) |
| 3 |
17.5 (193) |
| 4 |
17.3 (487) |
| 5 |
17.2 (742) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11780 (14.2) |
| 2 |
11322 (13.0) |
| 3 |
10179 (9.6) |
| 4 |
9871 (9.9) |
| 5 |
9870 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot