NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,111.0 |
| Mean read quality |
11.8 |
| Median read length |
5,152.0 |
| Median read quality |
13.0 |
| Number of reads |
3,192.0 |
| Read length N50 |
5,630.0 |
| STDEV read length |
1,623.5 |
| Total bases |
16,314,294.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3192 (100.0%) 16.3Mb |
| >Q7 |
3189 (99.9%) 16.3Mb |
| >Q10 |
2935 (91.9%) 15.1Mb |
| >Q12 |
2289 (71.7%) 11.9Mb |
| >Q15 |
136 (4.3%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4830) |
| 2 |
16.8 (6242) |
| 3 |
16.1 (3769) |
| 4 |
16.0 (5541) |
| 5 |
16.0 (6188) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12350 (8.9) |
| 2 |
10132 (14.1) |
| 3 |
9793 (12.6) |
| 4 |
9760 (12.5) |
| 5 |
9748 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot