NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,789.8 |
| Mean read quality |
11.2 |
| Median read length |
3,452.5 |
| Median read quality |
12.4 |
| Number of reads |
5,706.0 |
| Read length N50 |
4,180.0 |
| STDEV read length |
1,636.3 |
| Total bases |
21,624,577.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5706 (100.0%) 21.6Mb |
| >Q7 |
5690 (99.7%) 21.6Mb |
| >Q10 |
4881 (85.5%) 18.7Mb |
| >Q12 |
3405 (59.7%) 13.4Mb |
| >Q15 |
88 (1.5%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (3419) |
| 2 |
16.3 (3509) |
| 3 |
16.2 (2353) |
| 4 |
16.2 (4367) |
| 5 |
16.2 (2559) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11224 (9.4) |
| 2 |
9977 (7.4) |
| 3 |
9653 (14.6) |
| 4 |
9644 (14.0) |
| 5 |
9602 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot