NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,030.4 |
| Mean read quality |
8.8 |
| Median read length |
1,938.0 |
| Median read quality |
9.2 |
| Number of reads |
695.0 |
| Read length N50 |
3,575.0 |
| STDEV read length |
1,947.5 |
| Total bases |
1,411,128.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
695 (100.0%) 1.4Mb |
| >Q7 |
646 (92.9%) 1.4Mb |
| >Q10 |
301 (43.3%) 1.0Mb |
| >Q12 |
211 (30.4%) 0.7Mb |
| >Q15 |
13 (1.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (4544) |
| 2 |
16.2 (3947) |
| 3 |
16.2 (4590) |
| 4 |
16.1 (630) |
| 5 |
15.6 (3979) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20228 (7.8) |
| 2 |
10739 (7.8) |
| 3 |
9847 (8.4) |
| 4 |
8806 (6.5) |
| 5 |
7623 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot