NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,298.9 |
| Mean read quality |
10.9 |
| Median read length |
3,479.0 |
| Median read quality |
12.0 |
| Number of reads |
486.0 |
| Read length N50 |
3,629.0 |
| STDEV read length |
1,358.1 |
| Total bases |
1,603,284.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
486 (100.0%) 1.6Mb |
| >Q7 |
486 (100.0%) 1.6Mb |
| >Q10 |
397 (81.7%) 1.4Mb |
| >Q12 |
247 (50.8%) 0.9Mb |
| >Q15 |
5 (1.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (3149) |
| 2 |
15.4 (2635) |
| 3 |
15.2 (1996) |
| 4 |
15.2 (3619) |
| 5 |
15.0 (3615) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6943 (14.7) |
| 2 |
6934 (11.8) |
| 3 |
6921 (14.5) |
| 4 |
6919 (12.8) |
| 5 |
6912 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot