NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,989.8 |
| Mean read quality |
10.1 |
| Median read length |
3,841.0 |
| Median read quality |
11.2 |
| Number of reads |
15,418.0 |
| Read length N50 |
4,993.0 |
| STDEV read length |
2,075.3 |
| Total bases |
61,514,772.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15418 (100.0%) 61.5Mb |
| >Q7 |
15261 (99.0%) 61.3Mb |
| >Q10 |
10538 (68.3%) 46.5Mb |
| >Q12 |
5567 (36.1%) 25.5Mb |
| >Q15 |
94 (0.6%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (4635) |
| 2 |
16.3 (2594) |
| 3 |
16.3 (2998) |
| 4 |
16.2 (4079) |
| 5 |
16.1 (3179) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13522 (8.5) |
| 2 |
12220 (8.9) |
| 3 |
12154 (5.5) |
| 4 |
11585 (7.1) |
| 5 |
11450 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot