NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,297.2 |
| Mean read quality |
11.3 |
| Median read length |
4,101.0 |
| Median read quality |
12.6 |
| Number of reads |
15,687.0 |
| Read length N50 |
4,897.0 |
| STDEV read length |
1,675.8 |
| Total bases |
67,410,440.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15687 (100.0%) 67.4Mb |
| >Q7 |
15624 (99.6%) 67.2Mb |
| >Q10 |
13547 (86.4%) 59.4Mb |
| >Q12 |
9931 (63.3%) 44.1Mb |
| >Q15 |
286 (1.8%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (3334) |
| 2 |
17.1 (2748) |
| 3 |
17.0 (3331) |
| 4 |
17.0 (3228) |
| 5 |
16.6 (3276) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12003 (8.0) |
| 2 |
10934 (7.6) |
| 3 |
10407 (14.1) |
| 4 |
10121 (10.5) |
| 5 |
9864 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot