NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,200.8 |
| Mean read quality |
11.7 |
| Median read length |
4,701.0 |
| Median read quality |
13.3 |
| Number of reads |
24.0 |
| Read length N50 |
5,128.0 |
| STDEV read length |
1,686.1 |
| Total bases |
100,819.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24 (100.0%) 0.1Mb |
| >Q7 |
24 (100.0%) 0.1Mb |
| >Q10 |
22 (91.7%) 0.1Mb |
| >Q12 |
15 (62.5%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (4691) |
| 2 |
14.4 (5179) |
| 3 |
14.4 (5686) |
| 4 |
14.3 (4711) |
| 5 |
14.3 (5660) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6673 (12.4) |
| 2 |
6569 (10.7) |
| 3 |
5703 (14.1) |
| 4 |
5686 (14.4) |
| 5 |
5660 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot