NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,820.3 |
| Mean read quality |
11.8 |
| Median read length |
4,735.0 |
| Median read quality |
13.0 |
| Number of reads |
17,639.0 |
| Read length N50 |
5,411.0 |
| STDEV read length |
1,566.1 |
| Total bases |
85,024,559.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17639 (100.0%) 85.0Mb |
| >Q7 |
17625 (99.9%) 85.0Mb |
| >Q10 |
16287 (92.3%) 79.0Mb |
| >Q12 |
12685 (71.9%) 62.2Mb |
| >Q15 |
269 (1.5%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (4464) |
| 2 |
16.2 (1935) |
| 3 |
16.2 (2548) |
| 4 |
16.1 (944) |
| 5 |
16.0 (4738) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10515 (8.0) |
| 2 |
10477 (12.9) |
| 3 |
10460 (10.6) |
| 4 |
10434 (15.3) |
| 5 |
10327 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot