NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,940.8 |
| Mean read quality |
9.2 |
| Median read length |
1,887.0 |
| Median read quality |
10.2 |
| Number of reads |
149.0 |
| Read length N50 |
3,599.0 |
| STDEV read length |
1,833.5 |
| Total bases |
289,180.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
149 (100.0%) 0.3Mb |
| >Q7 |
149 (100.0%) 0.3Mb |
| >Q10 |
76 (51.0%) 0.2Mb |
| >Q12 |
37 (24.8%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (3638) |
| 2 |
14.5 (5646) |
| 3 |
14.3 (1606) |
| 4 |
14.0 (3432) |
| 5 |
13.9 (2934) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6392 (12.6) |
| 2 |
6130 (11.9) |
| 3 |
6122 (10.4) |
| 4 |
6097 (11.2) |
| 5 |
6012 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot