NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,248.4 |
| Mean read quality |
10.8 |
| Median read length |
4,346.0 |
| Median read quality |
12.1 |
| Number of reads |
456,935.0 |
| Read length N50 |
4,804.0 |
| STDEV read length |
1,538.5 |
| Total bases |
1,941,255,111.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
456935 (100.0%) 1941.3Mb |
| >Q7 |
454327 (99.4%) 1933.2Mb |
| >Q10 |
358150 (78.4%) 1575.6Mb |
| >Q12 |
236287 (51.7%) 1069.0Mb |
| >Q15 |
35593 (7.8%) 166.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (4071) |
| 2 |
18.4 (2736) |
| 3 |
18.3 (5270) |
| 4 |
18.2 (5334) |
| 5 |
18.2 (5246) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16012 (10.2) |
| 2 |
15169 (8.0) |
| 3 |
13226 (8.5) |
| 4 |
12915 (8.2) |
| 5 |
12287 (7.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot