NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,631.9 |
| Mean read quality |
9.6 |
| Median read length |
1,690.0 |
| Median read quality |
10.9 |
| Number of reads |
1,208.0 |
| Read length N50 |
2,246.0 |
| STDEV read length |
1,116.4 |
| Total bases |
1,971,361.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1208 (100.0%) 2.0Mb |
| >Q7 |
1165 (96.4%) 1.9Mb |
| >Q10 |
700 (57.9%) 1.4Mb |
| >Q12 |
467 (38.7%) 0.9Mb |
| >Q15 |
32 (2.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (1817) |
| 2 |
17.1 (1815) |
| 3 |
16.9 (1380) |
| 4 |
16.9 (2029) |
| 5 |
16.8 (1953) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9948 (8.6) |
| 2 |
8301 (7.7) |
| 3 |
7599 (6.8) |
| 4 |
6725 (7.9) |
| 5 |
6320 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot