NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,113.1 |
| Mean read quality |
10.6 |
| Median read length |
3,170.0 |
| Median read quality |
12.1 |
| Number of reads |
379.0 |
| Read length N50 |
3,597.0 |
| STDEV read length |
1,199.1 |
| Total bases |
1,179,857.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
377 (99.5%) 1.2Mb |
| >Q7 |
367 (96.8%) 1.2Mb |
| >Q10 |
306 (80.7%) 1.0Mb |
| >Q12 |
199 (52.5%) 0.6Mb |
| >Q15 |
2 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (2364) |
| 2 |
15.0 (3091) |
| 3 |
14.7 (3611) |
| 4 |
14.7 (3827) |
| 5 |
14.7 (3335) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9032 (10.5) |
| 2 |
6061 (13.4) |
| 3 |
6027 (12.9) |
| 4 |
6008 (11.1) |
| 5 |
5921 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot