NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,006.3 |
| Mean read quality |
10.1 |
| Median read length |
3,085.0 |
| Median read quality |
11.9 |
| Number of reads |
1,126.0 |
| Read length N50 |
4,362.0 |
| STDEV read length |
2,119.1 |
| Total bases |
3,385,089.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1126 (100.0%) 3.4Mb |
| >Q7 |
1096 (97.3%) 3.4Mb |
| >Q10 |
765 (67.9%) 2.9Mb |
| >Q12 |
556 (49.4%) 2.2Mb |
| >Q15 |
26 (2.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (1772) |
| 2 |
17.2 (2478) |
| 3 |
17.2 (3855) |
| 4 |
17.1 (2720) |
| 5 |
16.3 (2962) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9851 (9.5) |
| 2 |
9235 (13.6) |
| 3 |
9209 (12.4) |
| 4 |
8903 (12.9) |
| 5 |
8889 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot