NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,717.8 |
| Mean read quality |
11.3 |
| Median read length |
2,718.0 |
| Median read quality |
12.8 |
| Number of reads |
16,882.0 |
| Read length N50 |
2,980.0 |
| STDEV read length |
946.6 |
| Total bases |
45,881,367.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16882 (100.0%) 45.9Mb |
| >Q7 |
16789 (99.4%) 45.7Mb |
| >Q10 |
14385 (85.2%) 39.9Mb |
| >Q12 |
10790 (63.9%) 30.5Mb |
| >Q15 |
837 (5.0%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (3955) |
| 2 |
17.3 (2524) |
| 3 |
17.3 (3618) |
| 4 |
17.2 (3059) |
| 5 |
17.2 (2803) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10377 (12.4) |
| 2 |
8355 (13.3) |
| 3 |
8113 (11.1) |
| 4 |
8086 (8.0) |
| 5 |
7895 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot