NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,814.4 |
| Mean read quality |
11.4 |
| Median read length |
3,786.0 |
| Median read quality |
12.7 |
| Number of reads |
150,607.0 |
| Read length N50 |
4,120.0 |
| STDEV read length |
1,171.0 |
| Total bases |
574,475,598.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
150607 (100.0%) 574.5Mb |
| >Q7 |
150291 (99.8%) 573.4Mb |
| >Q10 |
133414 (88.6%) 513.1Mb |
| >Q12 |
96397 (64.0%) 375.4Mb |
| >Q15 |
2690 (1.8%) 10.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (4538) |
| 2 |
16.8 (263) |
| 3 |
16.7 (5213) |
| 4 |
16.6 (1636) |
| 5 |
16.6 (2883) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11795 (8.9) |
| 2 |
10667 (10.3) |
| 3 |
9549 (8.2) |
| 4 |
9324 (8.0) |
| 5 |
9166 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot