NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,416.4 |
| Mean read quality |
11.6 |
| Median read length |
2,764.0 |
| Median read quality |
12.6 |
| Number of reads |
384,822.0 |
| Read length N50 |
4,453.0 |
| STDEV read length |
1,506.2 |
| Total bases |
1,314,720,923.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
384812 (100.0%) 1314.7Mb |
| >Q7 |
383981 (99.8%) 1312.8Mb |
| >Q10 |
352015 (91.5%) 1219.0Mb |
| >Q12 |
248708 (64.6%) 884.4Mb |
| >Q15 |
8183 (2.1%) 33.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (204) |
| 2 |
17.5 (4442) |
| 3 |
17.4 (4495) |
| 4 |
17.3 (1654) |
| 5 |
17.2 (1021) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14569 (12.2) |
| 2 |
13770 (9.0) |
| 3 |
13019 (12.7) |
| 4 |
13002 (14.3) |
| 5 |
12671 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot