NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,402.9 |
| Mean read quality |
10.9 |
| Median read length |
3,421.0 |
| Median read quality |
11.7 |
| Number of reads |
18,098.0 |
| Read length N50 |
3,895.0 |
| STDEV read length |
1,361.1 |
| Total bases |
61,585,725.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18098 (100.0%) 61.6Mb |
| >Q7 |
18080 (99.9%) 61.5Mb |
| >Q10 |
15740 (87.0%) 55.3Mb |
| >Q12 |
7584 (41.9%) 27.7Mb |
| >Q15 |
16 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (3031) |
| 2 |
16.6 (1612) |
| 3 |
16.4 (2747) |
| 4 |
16.0 (2765) |
| 5 |
15.9 (2766) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10844 (11.1) |
| 2 |
10475 (11.7) |
| 3 |
10163 (10.5) |
| 4 |
10157 (9.6) |
| 5 |
9951 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot