NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,231.0 |
| Mean read quality |
11.1 |
| Median read length |
3,651.0 |
| Median read quality |
12.2 |
| Number of reads |
419,069.0 |
| Read length N50 |
4,342.0 |
| STDEV read length |
1,627.5 |
| Total bases |
1,353,997,856.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
419069 (100.0%) 1354.0Mb |
| >Q7 |
418899 (100.0%) 1353.9Mb |
| >Q10 |
339346 (81.0%) 1199.7Mb |
| >Q12 |
224525 (53.6%) 879.4Mb |
| >Q15 |
43023 (10.3%) 177.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (1916) |
| 2 |
18.4 (3617) |
| 3 |
18.3 (4029) |
| 4 |
18.3 (3496) |
| 5 |
18.2 (4307) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11926 (12.6) |
| 2 |
11414 (14.4) |
| 3 |
11308 (12.7) |
| 4 |
11306 (13.3) |
| 5 |
10439 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot