NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,659.5 |
| Mean read quality |
11.5 |
| Median read length |
3,559.0 |
| Median read quality |
12.6 |
| Number of reads |
22,146.0 |
| Read length N50 |
3,854.0 |
| STDEV read length |
1,107.7 |
| Total bases |
81,044,133.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22146 (100.0%) 81.0Mb |
| >Q7 |
22146 (100.0%) 81.0Mb |
| >Q10 |
19810 (89.5%) 73.0Mb |
| >Q12 |
14050 (63.4%) 52.3Mb |
| >Q15 |
531 (2.4%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4170) |
| 2 |
16.8 (4137) |
| 3 |
16.8 (3032) |
| 4 |
16.8 (2727) |
| 5 |
16.7 (3454) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9673 (10.3) |
| 2 |
8656 (10.0) |
| 3 |
8532 (9.0) |
| 4 |
8307 (13.0) |
| 5 |
8137 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot