NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,824.8 |
| Mean read quality |
11.0 |
| Median read length |
3,657.0 |
| Median read quality |
12.4 |
| Number of reads |
7,908.0 |
| Read length N50 |
4,382.0 |
| STDEV read length |
1,694.5 |
| Total bases |
30,246,511.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7908 (100.0%) 30.2Mb |
| >Q7 |
7855 (99.3%) 30.2Mb |
| >Q10 |
6532 (82.6%) 26.1Mb |
| >Q12 |
4644 (58.7%) 19.0Mb |
| >Q15 |
149 (1.9%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (4540) |
| 2 |
17.6 (2352) |
| 3 |
17.3 (3168) |
| 4 |
17.1 (3644) |
| 5 |
17.1 (3154) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10196 (7.9) |
| 2 |
9947 (8.8) |
| 3 |
9749 (11.6) |
| 4 |
9635 (13.7) |
| 5 |
9609 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot