NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,143.1 |
| Mean read quality |
11.1 |
| Median read length |
3,037.0 |
| Median read quality |
12.3 |
| Number of reads |
151,267.0 |
| Read length N50 |
3,293.0 |
| STDEV read length |
980.0 |
| Total bases |
475,444,558.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
151267 (100.0%) 475.4Mb |
| >Q7 |
151267 (100.0%) 475.4Mb |
| >Q10 |
128132 (84.7%) 407.3Mb |
| >Q12 |
83965 (55.5%) 268.6Mb |
| >Q15 |
4163 (2.8%) 13.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (319) |
| 2 |
18.0 (2383) |
| 3 |
17.9 (3177) |
| 4 |
17.3 (725) |
| 5 |
17.3 (2711) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10965 (12.2) |
| 2 |
10651 (12.2) |
| 3 |
10647 (13.1) |
| 4 |
9682 (12.3) |
| 5 |
9635 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot