NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,623.5 |
| Mean read quality |
10.9 |
| Median read length |
2,572.5 |
| Median read quality |
12.1 |
| Number of reads |
280.0 |
| Read length N50 |
3,381.0 |
| STDEV read length |
1,179.0 |
| Total bases |
734,591.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
280 (100.0%) 0.7Mb |
| >Q7 |
278 (99.3%) 0.7Mb |
| >Q10 |
232 (82.9%) 0.7Mb |
| >Q12 |
146 (52.1%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.6 (3429) |
| 2 |
14.6 (1499) |
| 3 |
14.5 (3566) |
| 4 |
14.5 (3547) |
| 5 |
14.5 (1876) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6455 (10.5) |
| 2 |
6327 (12.8) |
| 3 |
6318 (13.0) |
| 4 |
6126 (13.6) |
| 5 |
5541 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot