NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,143.8 |
| Mean read quality |
11.2 |
| Median read length |
4,115.0 |
| Median read quality |
12.3 |
| Number of reads |
17,423.0 |
| Read length N50 |
4,583.0 |
| STDEV read length |
1,419.1 |
| Total bases |
72,196,985.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17423 (100.0%) 72.2Mb |
| >Q7 |
17393 (99.8%) 72.1Mb |
| >Q10 |
15151 (87.0%) 63.4Mb |
| >Q12 |
10019 (57.5%) 42.6Mb |
| >Q15 |
71 (0.4%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (6445) |
| 2 |
15.5 (4411) |
| 3 |
15.5 (5154) |
| 4 |
15.5 (3730) |
| 5 |
15.5 (5011) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9693 (9.2) |
| 2 |
9690 (8.9) |
| 3 |
9066 (8.9) |
| 4 |
8569 (12.6) |
| 5 |
8545 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot