NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,729.4 |
| Mean read quality |
10.0 |
| Median read length |
2,954.0 |
| Median read quality |
11.3 |
| Number of reads |
1,589.0 |
| Read length N50 |
4,049.0 |
| STDEV read length |
1,868.6 |
| Total bases |
4,337,057.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1589 (100.0%) 4.3Mb |
| >Q7 |
1589 (100.0%) 4.3Mb |
| >Q10 |
1038 (65.3%) 3.7Mb |
| >Q12 |
610 (38.4%) 2.3Mb |
| >Q15 |
9 (0.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (2398) |
| 2 |
16.2 (3553) |
| 3 |
15.9 (2952) |
| 4 |
15.8 (3700) |
| 5 |
15.8 (2689) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8175 (11.7) |
| 2 |
8126 (10.1) |
| 3 |
7761 (12.1) |
| 4 |
7712 (9.2) |
| 5 |
7621 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot