NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,308.1 |
| Mean read quality |
11.3 |
| Median read length |
3,401.0 |
| Median read quality |
12.2 |
| Number of reads |
27,713.0 |
| Read length N50 |
3,721.0 |
| STDEV read length |
1,193.7 |
| Total bases |
91,676,722.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27713 (100.0%) 91.7Mb |
| >Q7 |
27696 (99.9%) 91.6Mb |
| >Q10 |
24730 (89.2%) 83.0Mb |
| >Q12 |
15044 (54.3%) 52.3Mb |
| >Q15 |
345 (1.2%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (165) |
| 2 |
16.7 (2395) |
| 3 |
16.6 (3367) |
| 4 |
16.4 (1249) |
| 5 |
16.4 (3400) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10815 (10.2) |
| 2 |
10675 (9.5) |
| 3 |
10456 (10.3) |
| 4 |
8521 (13.9) |
| 5 |
8396 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot