NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,080.8 |
| Mean read quality |
11.7 |
| Median read length |
4,539.0 |
| Median read quality |
12.5 |
| Number of reads |
94.0 |
| Read length N50 |
4,728.0 |
| STDEV read length |
1,417.2 |
| Total bases |
383,592.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
94 (100.0%) 0.4Mb |
| >Q7 |
94 (100.0%) 0.4Mb |
| >Q10 |
88 (93.6%) 0.4Mb |
| >Q12 |
61 (64.9%) 0.3Mb |
| >Q15 |
2 (2.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (4979) |
| 2 |
15.0 (4750) |
| 3 |
15.0 (5024) |
| 4 |
14.9 (4692) |
| 5 |
14.8 (3357) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8854 (12.5) |
| 2 |
6168 (10.3) |
| 3 |
6149 (11.9) |
| 4 |
6119 (14.5) |
| 5 |
5930 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot