NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,428.4 |
| Mean read quality |
11.1 |
| Median read length |
4,175.5 |
| Median read quality |
12.4 |
| Number of reads |
568.0 |
| Read length N50 |
4,870.0 |
| STDEV read length |
2,050.0 |
| Total bases |
2,515,332.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
568 (100.0%) 2.5Mb |
| >Q7 |
566 (99.6%) 2.5Mb |
| >Q10 |
470 (82.7%) 2.2Mb |
| >Q12 |
337 (59.3%) 1.6Mb |
| >Q15 |
13 (2.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (3534) |
| 2 |
15.6 (8286) |
| 3 |
15.5 (5117) |
| 4 |
15.3 (7183) |
| 5 |
15.3 (4279) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8456 (10.9) |
| 2 |
8404 (12.7) |
| 3 |
8391 (8.2) |
| 4 |
8389 (12.3) |
| 5 |
8342 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot