NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
838.9 |
| Mean read quality |
8.5 |
| Median read length |
238.0 |
| Median read quality |
8.9 |
| Number of reads |
111.0 |
| Read length N50 |
2,614.0 |
| STDEV read length |
1,203.9 |
| Total bases |
93,114.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
111 (100.0%) 0.1Mb |
| >Q7 |
111 (100.0%) 0.1Mb |
| >Q10 |
29 (26.1%) 0.0Mb |
| >Q12 |
9 (8.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (1990) |
| 2 |
13.1 (3818) |
| 3 |
13.1 (6303) |
| 4 |
12.7 (929) |
| 5 |
12.6 (3706) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6303 (13.1) |
| 2 |
3818 (13.1) |
| 3 |
3774 (12.1) |
| 4 |
3767 (10.1) |
| 5 |
3733 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot