NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,418.0 |
| Mean read quality |
11.1 |
| Median read length |
3,340.5 |
| Median read quality |
12.6 |
| Number of reads |
1,606.0 |
| Read length N50 |
4,070.0 |
| STDEV read length |
1,646.3 |
| Total bases |
5,489,325.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1606 (100.0%) 5.5Mb |
| >Q7 |
1589 (98.9%) 5.5Mb |
| >Q10 |
1345 (83.7%) 5.0Mb |
| >Q12 |
1010 (62.9%) 3.8Mb |
| >Q15 |
44 (2.7%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4417) |
| 2 |
16.8 (2966) |
| 3 |
16.6 (4312) |
| 4 |
16.4 (4423) |
| 5 |
16.1 (2659) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8574 (13.3) |
| 2 |
8485 (14.3) |
| 3 |
8436 (12.4) |
| 4 |
8431 (12.7) |
| 5 |
8422 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot