NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,426.0 |
| Mean read quality |
11.6 |
| Median read length |
4,476.5 |
| Median read quality |
12.9 |
| Number of reads |
5,708.0 |
| Read length N50 |
4,831.0 |
| STDEV read length |
1,596.9 |
| Total bases |
25,263,706.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5708 (100.0%) 25.3Mb |
| >Q7 |
5699 (99.8%) 25.3Mb |
| >Q10 |
5017 (87.9%) 22.6Mb |
| >Q12 |
3793 (66.5%) 17.3Mb |
| >Q15 |
350 (6.1%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (5894) |
| 2 |
16.8 (3147) |
| 3 |
16.7 (4888) |
| 4 |
16.6 (5053) |
| 5 |
16.6 (4694) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61416 (11.4) |
| 2 |
15263 (11.9) |
| 3 |
10858 (12.8) |
| 4 |
10704 (13.6) |
| 5 |
10124 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot