NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,936.3 |
| Mean read quality |
11.1 |
| Median read length |
3,333.0 |
| Median read quality |
12.2 |
| Number of reads |
78,236.0 |
| Read length N50 |
3,738.0 |
| STDEV read length |
1,411.1 |
| Total bases |
229,726,070.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78236 (100.0%) 229.7Mb |
| >Q7 |
78185 (99.9%) 229.7Mb |
| >Q10 |
62958 (80.5%) 202.0Mb |
| >Q12 |
41058 (52.5%) 145.2Mb |
| >Q15 |
7202 (9.2%) 26.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (842) |
| 2 |
18.1 (2906) |
| 3 |
18.0 (2873) |
| 4 |
17.9 (2261) |
| 5 |
17.8 (3876) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9931 (12.8) |
| 2 |
9879 (9.6) |
| 3 |
9014 (12.3) |
| 4 |
8723 (12.4) |
| 5 |
8563 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot