NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,663.1 |
| Mean read quality |
11.9 |
| Median read length |
2,723.0 |
| Median read quality |
13.2 |
| Number of reads |
3,035.0 |
| Read length N50 |
2,921.0 |
| STDEV read length |
796.0 |
| Total bases |
8,082,497.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3035 (100.0%) 8.1Mb |
| >Q7 |
3034 (100.0%) 8.1Mb |
| >Q10 |
2769 (91.2%) 7.5Mb |
| >Q12 |
2189 (72.1%) 6.0Mb |
| >Q15 |
214 (7.1%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (2260) |
| 2 |
16.6 (3305) |
| 3 |
16.5 (2083) |
| 4 |
16.5 (3252) |
| 5 |
16.5 (4091) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5550 (9.3) |
| 2 |
5456 (12.6) |
| 3 |
5453 (13.0) |
| 4 |
5432 (13.3) |
| 5 |
5432 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot